ChromosOmics - Database

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                                                  -  CHROMOSOME #21 -                                                 
ABNORMAL
Cases with clinical findings (W)

case no.
 		gender/
age at diagnosis
studied
material
 		de novo/
inherited
 		GTG-banding result
grade of mosaicism
 		final result of the sSMC
 		test
methods
 		clinical symptoms
 		Reference
21-
W-
q11.2/
1-1
°°°
 n.a./
postnatal		 PBL de novo 47,+mar[50%]/
46[50%]		 mar(21)(p?→q11.2)*
size ~0.4 MB		 n.a. subcenM with 3 BACs Difficulty with fine motor skills; mild DYS; small penis {19} case 24
21-
W-
q11.2/
1-2		 male/
prenatal		 AF n.a. 47,XY,+mar[?44%]/
46,XY[?55%]		 min(21)(pter→q11.2:)
aCGH (hg19): 13.25Mb		 aCGH Choroid plexus cyst, anomalies of skull,
mild macrocephaly		 {45} case P9
21-
W-
q11.2~
21.1/
1-1
°°°
 male/
62y		 PBL n.a. 47,XY,+mar[5]/
46,XY[15]		 min(21)(pter→q11.2~21.1:) cenM, subcenM, wcp13, wcp21 see below {0} provided from Belgium
psychomotor retardation; severe DD no sexual development; short stature, microcephaly; brachycephaly; large nose, behavioral problems; birth was "difficult" - weight 2850g;
21-
W-
q11.2~
21.1/
1-2
°°°
 male/
newborn		 PBL
(EKF-
cellbank)		 de novo 47,XY,+mar[5]/
46,XY[10]		 min(21)(pter→q11.2~21.1:)
FISH-data: break between 15.00 and 24.51 MB		 cenM, subcenM, LSI 21; LSI UBE3A; PCL-FISH;
UPD-test (also for #15)		 see below {37} case 22
Scoliosis of the spine, flat feet with ankles turning in, 22kg at age 4 ( both parents are very slim), was born underweight, wants to eat nonstop; depressed bridge of the nose, autism, delayed fine motor skills
21-
W-
q11.2 -
q21.3 -
q22.11/
1-1		 see 21-Ud-1
21-
W-
q21/
1-1
°°°
 female/
7y		 PBL de novo 47,XX,+mar[70%]/
46,XX[30%]		 r(21)(::p11.2→q21::) all available centromeric probes; wcp 21 slightly retarded development, flat root of nose, broad nose, wide mouth, dental anomalies, splayfoot, hypotonia of trunk {5} case 8
21-
W-
q21.?/
1-1
°°°
 female/
3.5y		 PBL de novo 47,XX,+r[56%]/
46,XX[44%]		 ?min(21)(:pter→q21.?:)* midi; wcp probes for the acrocentric chromosomes see below {8}
During pregnancy mother had taken multiple medications including synthroid and amphetamines; induced delivery at 36weeks due to maternal hypertension; weight 2,040g, OFC 31.5cm, APGAR 5/6/-;speech and motor delay at 3.5y; at this time height and weight at the 5th centile; OFC normal; long eyelashes, heavy eyebrows, wide-set eyes, protruding upper lip, autism suggested - no Down syndrome typical signs
21-
W-
q21.?/
1-2		 female/
2.5y		 PBL de novo 47,XX,+mar[100%] min(21)(pter→q21~22.1:) centromeric probes, subcenM Down syndrome {0} provided from Russia
***
21-
W-
q21.1/
1-1
°°°
 n.a./
postnatal		 PBL n.a. 47,+mar[75%]/
46[25%]		 mar(21)(p?→q21.1:)*
size ~4.7 MB = position 18.1 MB		 n.a. subcenM with 3 BACs, aCGH see below {19} case 25
Borderline normal intelligence with an IQ of 76; mild dysmorphic features; bipolar disorder with psychotic features; anxiety; diabetes mellitus, type 2; chronic enuresis; at 19 years of age, patient is taking general studies classes at a community college.
21-
W-
q21.1/
1-2		 female/
8y		 PBL n.a. 47,XX,+mar[6]/
46,XX[47]		 min(21)(pter→q21.1)
size in q-arm 2.7 MB = position 15.9 MB		 centromeric probes, subcenM;
aCGH		 seizures, regression, MR {0} provided from Germany
21-
W-
q21.1/
1-3		 male/
?postnatal		 ?PBL n.a. 47,XY,+mar[100%] min(21)(pter→q21.1:)
aCGH (hg19):15.55 MB		 aCGH syndactyly, scoliosis {45} case P8
21-
W-
q21.1/
1-4		 male/
6y
 PBL n.a. 47,XY,+mar[12]/
46,XY[17]		 min(21)(pter→q21.?1:)
in aCGH no imbalance
 subcenM
aCGH		 DD {0} provided from Germany
21-
W-
q21.1/
2-1
°°°
 see 21-Ud-2
21-
W-
q21.1~
21.2/
1-1		 female/
4y		 PBL de novo 47,XX,+mar[6]/
46,XX[15]		 inv dup(21)(q21.1~21.2)
acc to aCGH: break in 30,868,226 MB - so in 21q22.11		 acrocenM;
subcenM; LSI 21 (not present on sSMC)
aCGH		 Down syndrome like phenotype {0} provided from Germany
21-
W-
q21.1-q22.1/
1-1		 female/
3y		 PBL n.a. 47,XX,+mar[100%] der(21)(pter→q21.1:
:q22.1→pter)		 aCGH;
subcenM		 DD; minimal DYS; seizures {0} provided from Germany
21-
W-
q21.3/
1-1		 male/
9y		 PBL de novo 47,XX,+mar[100%] min(21)(pter→q21.3:) subcenM; LSI 21 (not present on sSMC) MR, no DS {0} provided from Belarus
21-
W-
q21.3/
1-2		 female/
prenatal		 AF n.a. 47,XX,+mar[?%]/
46,XX[?%]		 mar(21)(pter→q21.3:)* aCGH TOP - no info available {34} case 19
21-
W-
q21.3/
2-1		 female/
11y		 PBL n.a. 47,XX,+mar[6]/
46,XX[9]		 inv dup(21)(q21.3)
arr[hg19] bp in q 31.98 Mb		 subcenM;
aCGH		 abnormal {0} provided from Germany
21-
W-
q21~
22.1/
1-1		 male/
1m		 PBL maternal
in normal mother mar in 36/50 metaphases		 47,XY,+mar[53]/
46,XY[12]		 min(21)(pter→q21~22.1:)* cep probes; wcp probes; probe in 21q22.2 newborn studied due to hypotonia but without other abnormal phenotypic features {11}
21-
W-
22.1?1/
1-1		 male/
2y		 PBL de novo 47,XY,+mar[100%] min(21)(pter→q21.1?1:) cep probes; wcp probes; probe in 21q22.2 see below {0} provided from Hungary
abnormal ears, hypertelorism, almond-shaped palpebral fissures, carp-shaped mouth, brachydacytly, delayed motor and speech development, muscular hypotonia, cryptorchism
21-
W-
q22.13/
1-1		 female/
prenatal		 AF n.a. 47,XX,+mar[25%]/
46,XX[75%]		 min(21)(:p12→q22.13:)
array: 0.00-37.88 MB		 midi, aCGH AMA; TOP due to phokomely of all 4 extremities
 {0} provided from Germany
21-
W-
q22.3/
1-1		 n.a./
prenatal		 chord blood de novo 47,+mar[45]/
46[5]		 inv dup(21)(p10) cep probes, wcp21 AMA and ultrasound abnormalities: diaphragmic hernia, ascites, Dandy Walker anomaly {14} case 20

W-Cases with similar imbalances NOT caused by sSMC (W-IMB)

case no.
 		gender/
age at diagnosis
 		studied
material
 		de novo/
Inherited
 		GTG-banding and final FISH result test
methods
 		clinical symptoms
 		Reference
21-
W-
IMB-
q22.1/
1-1 to
1-3 		see {25-27} {25-27}
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W-cases with unclear/insufficient characterization of the sSMC (CW)

case no.
 		gender/
age at diagnosis
studied
material
 		de novo/
inherited
 		GTG-banding result
grade of mosaicism
 		final result of the sSMC
 		test
methods
 		clinical symptoms
 		Reference
21-
CW-
1 		male/
1y 		PBL de novo 47,XY,+mar[50%]/
46,XY[50%]
del(21)(q?)* (D13/21Z1+,wcp21+) 		different FISH probes mild Down-syndrome features {2} case 8
21-
CW-
2
 		female/
1m 		PBL maternal (in 16/50 mitosis in mother) 47,XX,r(21),+mar[20%]/
46,XX,r21[?]/
45,XX,-21[?] 		inv dup (21)(q1?)* (D13/21Z1++,wcp21+) different FISH probes see below {2} case 9
pregnancy and delivery normal; weight 3080g; length 48cm; APGAR 4/8/9; asphyxia; facial dysmorphism like low forehead, antimongoloid slant of palpebral fissures, narrow lips, low set ears, microretrognatia,; large hands and irregularly inserted toes
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