ChromosOmics - Database

Icon by Leon Liehr                   

                                                  CHROMOSOME #20 -                                                 
UNCLEAR

Cases without clinical findings
Similar imbalances – no sSMC
Cases with clinical findings
Similar imbalances – no sSMC
Cases with isochromosome 20p
Cases without clear clinical correlation
Cases with discontinous sSMC
Cases with complex sSMC
Cases with UPD and sSMC
Cases with neocentromeres
Similar imbalances - no sSMC
Tumor
DISCLAIMER
In general 70% of sSMC carriers are clinically normal. The figures listed above

are based on the bias, that mainly clinically aberrant cases are studied and reported in literature!


UPD (uniparental disomy) cases: UPD(20)mat UPD(20)pat UPD(20)mat or pat

Cases with unclear clinical correlation (U)

case no.
gender/
age at diagnosis

studied
material

de novo/
inherited

GTG-banding result
grade of mosaicism

final result of the sSMC
test
methods

clinical symptoms
Reference
20-
U-
1
see mult 2-6
20-
U-
2
see -0Xf-20-1 {25}
20-
U-
3
female/
prenatal
AF de novo
47,XX,+mar[?%]/
46,XX[?%]
r(20)(::p13q13.32::)[7]/
r(20)(::p13
q13.32:
:p13
q13.32::)[1]
cenM;
subcenM, MCB
AMA; TOP {0} provided from Germany
20-
U-
4
male/
prenatal
AF de novo 47,XY,+mar[100%] mar(20) n.a. AMA; TOP {27} case 76
20-
U-
5
male/
prenatal
AF n.a. 47,XY,+mar[20]/
46,XY[3]
r(20)(::q11.21q13.12::) n.a. AMA; half of twin with the other fetus being carrier of a mar(20)(investigated elsewhere) {48} case 20
20-
U-
6
male/
prenatal
AF n.a. 47,XY,+mar[100%] min(20)(:p11.21q11.21:) cenM, subcenM n.a. {0} provided from Portugal
20-
U-
7
female/
prenatal
AF n.a. 47,XX,+mar[100%] min(20)(:p11.1q11.1:) cenM, subcenM n.a. {0} provided from Portugal
20-
U-
8
see 20-W-p11.1/5-1
20-
U-
9
see 20-Uu-1
20-
U-
10
see 20-Uu-2
20-
U-
11
male/
prenatal
AF n.a. 47,XY,+mar[90%]/
46,XY[10%]
r(20)(::p11.1q11.2::)[10]/min(20)(:p11.1q11.2:)[2]
FISH-result for break in long arm: between 38.11 and 46.72 MB
wcps, subcenM, PCL-FISH postnatal bilatheral sensorineural hearing loss {54} case 21
20-
U-
12
female/
prenatal
AF/ PBL de novo in AF - 46,XX[15]
in PBL: 47,XXX[2]/
47,XX,+mar[17]/
46,XX[2]
mar(20)(:p11.1q11.21::)
aCGH cen20 to 32.09 MB
besides: der(20)del(20)(p12.2p12.2)dup(20)(p12.2p12.1)
FISH; aCGH congenital heart defect, preauricular tags, growth retardation {55} case 9
20-
U-
13
male/
prenatal
AF de novo 47,XY,+20[3]/
47,XY,+mar[14]/
46,XY[3]
min(20)(:p12~13q11.1:) subcenM plexuscysts, cleft lip and palate {0} provided from Germanyl
20-
U-
14
n.a./
postnatal
PBL n.a. 47,XN,+mar[?%] r(20) FISH n.a. {60} 1 case
20-
U-
15
female/
prenatal
CVS de novo 47,XX,+mar[100%] min(20)(:p11.21→q12:)
aCGH: 24.82-37.14 MB
aCGH AMA, n.a. {62} case CVS-1
20-
U-
16
see 20-Uu-3
20-
U-
17
female/
prenatal
CVS de novo 48,XX,+marx2[100%] min(20)(:p13→q11.21:)
hg19: 600,001-29,700,000
FISH, cep 20;
NIPT; aCGH
normal child born as confined placental mosaic
{70}

Cases with complex sSMC (Uc)

case no.
gender/
age at diagnosis

studied
material

de novo/
inherited

GTG-banding result
grade of mosaicism

final result of the sSMC
test
methods

clinical symptoms
Reference
20-
Uc-
1
-
-
-
-
-
-
-
-

Cases with discontinous sSMC (Ud)

case no.
gender/
age at diagnosis

studied
material

de novo/
inherited

GTG-banding result
grade of mosaicism

final result of the sSMC
test
methods

clinical symptoms
Reference
20-
Ud-
1
male/
1m
PBL de novo 47,XY,+mar[48%]/
46,XY[52%]
r(20)(::p10q12:
:q13.2
q13.33::)
midi Birth weight: 3510g, length: 48cm; mental retardation, behavioral problems, low-set ears, and restricted mobility in the hips {5} case O
{6} case E
{14} case 24

Cases with UPD (Uu)

case no.
gender/
age at diagnosis

studied
material

de novo/
inherited

GTG-banding result
grade of mosaicism

final result of the sSMC
test
methods

clinical symptoms
Reference
20-
Uu-
1

male/
1m
PBL de novo 47,XY,+mar[100%] min(20)(pterq11.1:)
maternal UPD 20
centromeric probes, subcenM, MCB; UPD-test see below {0}
born at 36 weeks gestation; birth weight - 1.92kg; at birth - plagiocephaly; micrognathia; long philtrum; high arched palate; low set ears; slightly widened bulbar fingers; slightly prominent occiput and prominent forehead; right inguinal hernia; inverted nipples; hypospadias; torticollis; a heart scan at 3m showed 4 VSDs and a PFO. He also suffers from gastroesophagial reflux; mild optic nerve hypoplasia, nystagmus and some asymmetric opsoclonus - more in the left eye than right eye. MRI brain scan in at 10m of age revealed a wide range of craniocerebral abnormalities, neurodevelopment delay; dysplastic inner ear on left side and cerebellar tonsillar ectopia through the foramen magnum. At 1y he was operated on to lower his left un-descended testicle. Spine MRI and X-rays at 13m showed scoliosis. At 16m still unable to sit unaided and now had gaiters for his legs. Feeding problems after birth and was fed via an NG tube until 1y when a gastrosomy PEG was introduced. At 15m weight 7.22kg.
20-
Uu-
2
male/
1m
PBL de novo 47,XY,+mar[20]/
46,XY[28]
min(20)(:p11.1q11.1:)
maternal UPD 20
midi; UPD-test growth retardation; minor facial DYS; hyperactive; mother at age of conception 40y;  IUGR {3, 58}
20-
Uu-
3
male/
1m
PBL de novo 47,XY,+mar[13]/
46,XY[7]
mar(20)(p12.2q11.21)
aCGH: 10.61-29.64 Mb
UPD(20)mat
aCGH DYS, DD, cleft palate, growth retardation, frontal bossing {66}