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ChromosOmics - Database
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CHROMOSOME 9 -
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Heterochromatic
- (peri)centromeric variants
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In Ref 92 it is suggested that
lower PAPP-A and higher uE3 levels are observed
in women having fetuses with chromosomal polymorphisms
of chr. 9, including 9ph+ variants
While in Ref 295 no hint on a
clear correlation of chr. 9 heteromorphisms was found in
>330 patients,
Ref 125 found enhanced apoptosis in 2/6 and
oligozospermia in 4/6 studied patients.
case no.
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(molecular) cytogenetic result
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clinical symptoms
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reference
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09-
cen+/
1-1 to few
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9cen+
D9Z4
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none
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{1, pages 66-68;
46}
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09-
cen+/
2-1 to few
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dup(9)(p11.1q11)
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none
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{1, pages 66-68;
46}
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09-
cen+/
3-1 to few
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dup(9)(p11.1q12)
most likly some subvariants exist
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none
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{1, pages 66-68;
46}
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09-
cen+/
4-1 to few
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dup(9)(p11.1q21.11)
most likly some subvariants exist
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none
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{1, pages 66-68;
46}
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09-
cen-/
1-1 to few
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9cen-
D9Z4
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none
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{1, pages 66-68;
46}
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09-
inv9p23/
1-1 to 1-10
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inv(9)(p23q22.3)
frequently observed in Greece
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none
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{91}
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09-
inv9p13.1/
1-1 to many
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inv(9)(p13.1q21.11)
= inv(9)(var2)
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none
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{1, pages 66-68;
46}
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09-
inv9p13.1/
1-1 to few
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inv(9)(p13.1q21.11)
= inv(9)(var2a)
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none
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{1, pages 66-68;
46}
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09-
inv9p12/
1-1 to many
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inv(9)(p12q21.11)
= inv(9)(var1)
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none
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{1, pages 66-68;
46}
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09-
inv-9p11/
1-1 to 1-173 (and many more)
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inv(9)(p11q13)
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none
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{1, page 10}
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09-
inv9p11/
1-174
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inv(9)(p11q13)dn
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n.a.
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{1, page 25}
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09-
inv9p11.2/
1-1
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inv(9)(p11.2q11)
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none
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{0-62984}
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09-
inv9p11.1/
1-1 to few
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inv(9)(p11.1q12)
= inv(9)het
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none
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{1, pages 66-68;
46}
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09-
q12/
1-1 to 1-87
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9qh+
D9Z3
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none
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{1, page 9}
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09-
q12/
1-88
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qh+
D9Z3
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none
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{1, page 25}
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09-/
q12/
2-1 to few
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dup(9)(q12q13)
at least two variants
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none
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{1, pages 66-68;
46}
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09-
q12/
3-1 to few
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9qh-
D9Z3
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none
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{1, pages 66-68;
46}
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Heterochromatic - other
heterochromatic variants |
case no.
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(molecular)
cytogenetic result
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clinical
symptoms
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reference
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09-
HHM-
owncep/
1-1 to few
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D9Z4
can give signals on centromere 4
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none
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{1}
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09-
HHM-
9q12/
1-1 to 1-2
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D9Z3
was inserted in / added to
5
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none
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{1, page 63; 44-45}
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09-
HHM-
9q12/
1-3
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D9Z3
was inserted in / added to
8
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none
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{0}
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09-
HHM-
18p11.1q11.1/
1-1
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ins(9;18)(q12;p11.1q11.1)
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none
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{1, page 81, 57}
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09-
HHM-
acro/
1-1 to 1-3
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der(9)t(9;acro)(q34.3;p11.2)
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none
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{1; 98 (case 9qs)}
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Euchromatic deletions |
For mol. characterization of pericentric Chr. 9 EVs see Ref 128
case no.
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(molecular)
cytogenetic result
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clinical
symptoms
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reference
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09-
EHM-del
pterp24.3/
1-1
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del(9)(p24.3)
PAC 43N6
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none
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{74}
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09-
EHM-del
p13p13/
1-1 to few
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del(9)(p13p13),
i.e. 9ph-
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none
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{1, pages 66-68;
46}
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09-
EHM-del
q13q13/
1-1 to few
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del(9)(q13q21.11)
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none
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{1}
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09-
EHM-del
q21.11q21.11/
1-1
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del(9)(q21.11q21.12)(midi36+,RP11-128P23+,D9Z4+,D9Z1+,
RP11-88I18+,RP11-430C15+,RP11-20D12+,RP11-66O21+,midi36
dim)
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none
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{0 - 69228}
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09-
EHM-del
q31.2q32/
1-1
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del(9)(q31.2q32)
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none
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{1}
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09-
EHM-del
q34.3qter/
1-1
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del(9)(q34.3)
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none
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{1}
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Euchromatic
duplications |
For mol. characterization of pericentric Chr. 9 EVs see Ref 128
case no.
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(molecular)
cytogenetic result
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clinical
symptoms
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reference
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09-
EHM-dup
p24.2p13.3/
1-1
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dup(9)(p24.2p13.3)
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none
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{1}
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09-
EHM-dup
p24p22/
1-1
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dup(9)(p24p22)
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mild
to moderate
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{1}
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09-
EHM-dup
p21.3p12/
1-1
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ins(5;9)(p13.3;p12p21.3)
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none
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{81}
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09-
EHM-dup
p13/
1-1 to multiple
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dup(9)(p13p13),
i.e. 9ph+
RP11-402N8; RP11-128P23
evtl. the same
RP11-138L21
amp,RP11-128P23 amp,RP11-242D12 amp
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none
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{1, pages 66-68;
94-95; 46; 105}
{0} 67564
{0} 68716
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09-
EHM-dup
p13/
2-1
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ish
9ph+,inv(9)(q13q12)(midi36++,RP11-128P23++,D9Z4+,D9Z3+,
midi36+,D9Z3+,RP11-430C15+,midi36+)
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none
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{0 - 69934}
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09-
EHM-dup
p13.1q21.12/
1-1 to few
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sSMC(9)
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none
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{sSMC
page}
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09-
EHM-dup
q13/
1-1 to few
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dup(9)(q13q13),
i.e. 9qh+(var1)
RP11-211E19; RP11-88I18
or
amp(9)(q13q13)(RP11-128P23+,midi36+,D9Z4+,D9Z3+,midi36+++,
RP11-430C15+) |
none
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{1, pages 66-68;
94-95; 46; 69333}
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09-
EHM-dup
q13/
2-1 to 2-2
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dup(9)(q13q21),
i.e. 9qh+(var1?)
amp(9)(q13q21.11)(midi36+,RP11-128P23+,D9Z4+,midi36amp,RP11-430C15amp)
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none
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{0 - 68244; 0 - 69712}
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