ChromosOmics - Database

Icon by Leon Liehr                   

                                                  CHROMOSOME #2 -                                                 
UNCLEAR

 
Cases without clinical findings
Similar imbalances – no sSMC
Cases with clinical findings
Similar imbalances – no sSMC
Cases without clear clinical correlation
Cases with discontinous sSMC
Cases with complex sSMC
Cases with UPD and sSMC
Cases with neocentromeres
Similar imbalances
Tumor
DISCLAIMER
In general 70% of sSMC carriers are clinically normal. The figures listed above

are based on the bias, that mainly clinically aberrant cases are studied and reported in literature!



UPD (uniparental disomy) cases: UPD(2)mat UPD(2)pat UPD(2)mat or pat

Cases with unclear clinical correlation (U)

case no.
gender/
age at diagnosis

studied
material

de novo/
inherited

GTG-banding result
grade of mosaicism

final result of the sSMC
test
methods

clinical symptoms
Reference
02-
U-
1
male/
prenatal
n.a. n.a. 47,XY,+mar[mos] mar(2) SKY TOP {17}
02-
U-
2
male/
prenatal
AF n.a. 47,XY,+r[50%]/
46,XY[50%]
r(2)(::p11.1q12~13::) cenM; subcenM, MCB TOP in week 22; no autopsy performed {0} provided by Dr. Beudt, Frankfurt, Germany
02-
U-
3
male/
n.a.
n.a. n.a. 47,XY,+mar [42]/
46,XY[58]
inv dup(2)(:q11.2p11.1:
:p11.1
q11.2:)
midi; subcenM n.a. {0} provided by Dr. N. Rubtsov, Novosibirsk, Russia
02-
U-
4
male
prenatal
AF, fetal blood, CH de novo 47,XY,+mar [34]/
46,XY[3] (AF)
mosaic varies in AF, CH and blood between 0, 1.8, ~30, 40 and 92% of cells with sSMC
r(2)(::p11.1q12.3::) FISH using different probes; subcenM- variant Prenatal diagnosis due to advanced maternal age; TOP; in autopsy no malformations observed {29}
02-
U-
5
n.a./
prenatal
AF de novo 47,+mar [100%] r(2)(::p11.1q11.1::)* n.a. Normal sonography at ?18 weeks gestation; AMA {32} case 6
02-
U-
6
female/
prenatal
AF de novo 47,XX,+mar[47]/
46,XX[33]
r(2)(::p11.2q11.2::)
aCGH: 96.12-99.12
cenM, subcenM;
aCGH
reason for cytogenetics not known; TOP {0} provided by Dr. A. Polityko, Minsk, Belarus
02-
U-
7
male/
prenatal
AF n.a. 47,XY,+mar[7]/
46,XY[100]
min(2)(:p11.1q11.1:) cenM, subcenM TOP - no info available {0} provided by Dr. C. Fuster, Spain
02-
U-
8
female/
prenatal
AF n.a. 47,XX,+mar[?%]/
46,XX[?%]
min(2) SKY AMA- no info available {48} case F0425680
02-
U-
9
female/
prenatal
AF n.a. 47,XX,+mar[10%]/
46,XX[90%]
min(2)(:p11.2q11.1:) cenM, subcenM AMA, TOP
{0} provided by Dr. Ana Barreta, Porto, Portugal
02-
U-
10
female/
10y
PBL mat 47,XX,+mar[100%] mar(2)(:p11.1q12.3:)
aCGH (hg19): 95.53-108.08 MB
aCGH DD, short stature; also imb. in 18p {56} case 12
02-
U-
11
male/
10y
PBL de novo 47,XY,+mar[8]/
46,XY[42]
mar(2)(:p11.1q12.1:)
aCGH (hg19): 95.53-105.36 MB
aCGH, FISH premature, DD, ASD {56} case 13
02-
U-
12
male/
prenatal
AF/ fetal blood de novo AF: 47,XY,+mar[16]/
46,XY[15]
fetal blood: 47,XY,+mar[10]/46,XY[20]
mar(2)(:p12→q14.1:)
aCGH (hg19): 78,08-116,080 Mb
aCGH AMA; normal child born; normal at 6 months {57}
case 15X0023
02-
U-
13
male/
prenatal
AF n.a. 47,XY,+mar[7]/
46,XY[23]
min(2)(:p11.1→q11.2:) cenM; subcenM AMA; no further information available {0} provided by Dr. du Bois, Böblingen, Germany
02-
U-
14
female/
prenatal
AF n.a. 47,XX,+mar[16]/
46,XX[3]
min(2)(:q11.1 or q11.2q1?3:) midi AMA, n.a.
{0} provided from Serbia
02-
U-
15
female/
prenatal
AF de novo 47,XX,+mar[6]/
46,XX[24]
mar(2)(:p12q13.2:)
aCGH (hg19): 82947063-
104957361

aCGH oligohydramnio, TOP
{61} case 2

Cases with complex sSMC (Uc)

case no.
gender/
age at diagnosis

studied
material

de novo/
Inherited

GTG-banding and final result fo sSMC and
grade of mosaicism

test
methods

clinical symptoms
Reference
02-
Uc-
1

-
-
-
-
-
-
-


Cases with discontinous sSMC (Ud)

case no.
gender/
age at diagnosis

studied
material

de novo/
inherited

GTG-banding result
grade of mosaicism

final result of the sSMC
test
methods

clinical symptoms
Reference
02-
Ud-1

female/
2 y
PBL de novo 48,XX,+marx2[37%],
47,XX,+mar[51%],
46,XX[12%]
see below NGS modest global DD {59} case sSMC2a
seq[GRCh37] +min(2)(:q11.1→q11.2::q12.2::q11.2→q12.1:)
chr2:g.[cen_95326241~_98026880~::98058590~_102613162::106555287::TA::106555288_107260062~::chr2:102613163~
_102867861~]add
02-
Ud-2

female/ prenatal fibroblasts de novo 47,XX,+r[70%],
46,XX[30%]
see below NGS
UPD test
multiple malformations
TOP
{59} case sSMC2b
seq[GRCh37] +r(2)(::q11.1→q11.2::q32.2→q36.3::)chr2:g.[cen_95326171_97556545:
:191545235_230273236inv]addmaternal hetero/ isodisomy at 2p24.3p14, 2q11.2q12.3 and 2q36.3q37.2
-
-
-
-
-
-
-
-
-

Cases with UPD (Uu)

case no.
gender/
age at diagnosis

studied
material

de novo/
inherited

GTG-banding result
grade of mosaicism

final result of the sSMC
test
methods

clinical symptoms
Reference
02-
Uu-
1

-
-
-
-
-
-
-
-