ChromosOmics - Database

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                                                  CHROMOSOME #9 -                                                 
NORMAL

Cases without clinical findings (O)

case no.
gender/
age at diagnosis

studied
material

de novo/
inherited

GTG-banding result
grade of mosaicism

final result of the sSMC
test
methods

clinical symptoms
Reference
09-
O-
pter/
1-1
see 09-W-iso/2-1
09-
O-
pter/
1-2
see 09-W-iso/2-2
09-
O-
pter/
1-3
see 09-W-iso/2-3
09-
O-
pter/
1-4
see 09-W-iso/2-4
09-
O-
pter/
1-5
see 09-W-iso/2-5
09-
O-
p13.2/
1-1
male/
prenatal
AF de novo
47,XY,+mar[31]/
46,XY[9]
min(9)(:p13.2q12:) subcenM; 1 Mb set
NIPT showed  a trisomy 9 and CVS as well. sonography normal; normal child born
{0}
09-
O-
p13.1/
1-1
female/
27y
PBL n.a. 47,XX,+r[26]/
46,XX[4]
r(9)(::p13.1q21.12::) aCGH normal female with recurrent miscarriages (4 miscarriages & 1 live birth) {54} case 1
{109} case 9-1
09-
O-
p13.1/
2-1
female/
adult
PBL
(EKF-
cellbank)
n.a. 47,XX,+mar[27]/
46,XX[8]
del(9)(q11) pcps, subtelomere 9pter and cep 9 normal female, infertile {0} provided from Spain
09-
O-
p12/
1-1
male/
prenatal
AF de novo 47,XY,+mar[5]/
46,XY[15]
min(9)(:p12q10:)
44.39-? MB
r(9)(::p11.2
q10::)
midi;
aCGH
no ultrasound abnormalities; child born without clinical symptoms; no symptoms at age of 5 years {0}
{2} case 56
***
09-
O-
p12/
1-2

female/
28y
PBL de novo 47,XX,+mar[15]/
46,XX[5]
r(9)(::p12q10::)
42.96-70.50 MB
r(9)(::p11.2
q10::)
midi;
cenM;
subcenM
aCGH
healthy woman; however, history of three abortions; one healthy daughter has the same marker in 50% of the blood cells {0}
{2} case 55
{45} case 15
{109} case 9-2
09-
O-
p12/
1-3
female/
prenatal
AF, PBL n.a. Amnion: 47,XX,+mar[9]/
46,XX[26]

Blood: 47,XX,+mar[30]/
46,XX[10]
r(9)(::p12q11::)
aCGH: no euchromatin detected
cenM;
subcenM
AMA, twin pregnancy; second twin - male - without mar, normal at 2 years {0} provided from Turkey
09-
O-
p12/
1-4
female/
22y
PBL
n.a. 47,XX,+mar[14]/
46,XX[109]
min(9)(:p12q10:)
cenM normal female, infertile
{0} provided from Croatia
09-
O-
p12/
2-1
male/
prenatal
AF maternal
(73% in mother)
47,XY,+mar[10]/
46,XY[16]
min(9)(:p12q11:) midi AMA. no data available on child, however, mother was normal. {11} case 3
09-
O-
p12/
2-2
female/
39y
PBL n.a. 47,XX,+mar[100%]
min(9)(:p12q11:) ceps, subcenM
normal female, infertile {0} provided from Germany
09-
O-
p12/
2-2
male/
prenatal
AF maternal
(40% in mother)
47,XY,+mar[100%] min(9)(:p12q11:) SKY; cep9; YAC 782D6 Amniocentesis due to ??; child normal at birth; mother was normal. {23} case 8
09-
O-
p12/
3-1
female/
postnatal
PBL de novo
47,XX,+mar[?%]/
46,XX[?%]
min(9)(:p12q12:)[1]/
min(9)(:p12
q12:
:q12
p12:)[5]/
r(9)(::p12
q12::)[2]/
r(9)(::p12
q12:
:p12
q12::)x2[1]
M-FISH; CGH, HR-CGH, subcenM normal woman, but with repeated miscarriage {32, 35}
{45} case 16
{109} case 9-3
09-
O-
p12/
3-2
male/
21y
PBL
(EKF-
cellbank)
n.a. 47,XY,+mar[90%]/
46,XY[10%]
r(9)(::p12q12::)[8]/
min(9)(:p12
q12:)[5]/
r(9;9)(::p12
q12:
:p12
q12::)[2]
aCGH: no euchromatin detected
cenM, subcenM;
aCGH
normal man, but infertility {100} case Srm-2
{109} case 9-4
09-
O-
p12/
4-1
male/
52y
PBL
(EKF-
cellbank)
n.a. 47,XY,+r[22%]/
46,XY[78%]
r(9)(::p12q12::) M-FISH; subcenM normal male; secondary sterility {0} provided from Germany
09-
O-
p12/
4-2
male/
prenatal
AF, PBL
(EKF-
cellbank)
n.a. 47,XY,+r[50%]/
46,XY[50%]
r(9)(::p12q12::)[6]/
min(9)(:p12
q12:)[4]
cenM, subcenM; UPD-test AMA, normal sonography, normal child born {0} provided from Germany
09-
O-
p12/
4-3
male/
32y
PBL n.a 47,XY,+mar[100%] min(9)(:p12q12:)
aCGH: no euchromatin detected
cenM, subcenM;
aCGH
normal male, infertility {109} case 9-5
09-
O-
p12/
4-4
female/
34y
PBL n.a 47,XX,+mar[20%]/
46,XX[80%]
min(9)(:p12q12:) cenM, subcenM normal female, infertility; repeated abortions {0} provided from Germany
09-
O-
p12/
5-1
male/
prenatal

AF
n.a 47,XY,+mar[53]/
46,XY[19]
min(9)(:p12q11:)[7]/
min(9)(:p12
q12:)[4]
acc. to aCGH:
9p21.3 - q13; 23.78-68.15 MB
cenM; subcenM; UPD-test enhanced nuchal translucency in early pregnancy, in week 32 normal in ultrasound, child normal at birth {0} provided from Germany
09-
O-
p12/
5-2
male/
prenatal
AF de novo 48,XY,+mar,+r[4]/
47,XY,+mar[25]/
47,XY,+r[1]/
46,XY[6]
min(9)(:p11.1q1?2:)/
r(9)(p12→q1?2)

aCGH shows due to crosshybridization p13.1 to q21.1
UPD(9)pat
aCGH; cep9; UPD test AMA, normal sonography, normal child born {120}
09-
O-
p12/
5-3
male/
adult
PBL n.a. 47,XX,+mar min(9)(:p11.2q11:) cenM; subcenM normal female, infertile
{0} provided from Spain
09-
O-
p12/
6-1
female/
5y
PBL
(EKF-
cellbank)
de novo 51,XX,+mar1,+mar2x4[1]/
49,XX,+mar1x2,+mar3[1]/
48,XX,+mar1,+mar2[9]/
48,XX,+mar1,+mar3[5]/
47,XX,+mar2[2]/
47,XX,+mar3[1]/
46,XX[1]
mar1 =
min(9)(:p12
q10:)
mar2 =
min(9)(:p11.1
q12:)
mar3 = r(9)(::p11.1
q12::)
cenM; subcenM; UPD-test
normal phenotype with dwarphism - possibly familial
{0} provided from Germany
09-
O-
p11.2/
1-1
n.a./
adult
PBL n.a. 47,XN,+mar[?%] r(9)(::p11.2p10::) MCB normal, infertile. {141} 1 case
09-
O-
p11.1/
1-1
female/
prenatal
AF/PBL de novo 47,XX,+mar[40%]/
46,XX[60%]
r(9)(::p?11.1q?13::)* radioactive ISH; satellite III probe for chr. 9 AMA. child normal at age of 4.5 years. {7} case 2
09-
O-
p11.1/
2-1
n.a./
prenatal
AF de novo 47,+mar[20%]/
46[80%]
r(9)(::p11.1q12::)[19]/
r(9)(::p11.1
q12:
:q12
p11.1::)
cenM, subcenM; UPD-test
AMA. child normal at birth
{0} provided by from Germany
09-
O-
p11.1/
3-1
female/
39y
PBL n.a. 47,XX,+mar1[15]/
47,XX,+mar2[11]/
46,XX[24]
mar1: min(9)(:p11.1q12:)
mar2: min(9)(:p11.1→q12:
:q12→p11.1:)
cenM,
subcenM
normal phenotype - infertility {0} provided by from Germany
09-
O-
p11.1/
3-2
male/
43y
PBL n.a. 47,XY,+mar[9]/
46,XY[6]
min(9)(:p11.1→q12:) cenM,
subcenM
normal phenotype - infertility {0} provided from Spain
09-
O-
p11.1/
4-1
male/
43y
PBL n.a. 47,XY,+mar[67%]/
46,XY[33%]
min(9)(:p11.1→q11:) cenM,
subcenM
normal phenotype - infertility {0} provided from Greece
09-
O-
p11.1/
4-2
male/
33y
PBL n.a. 47,XY,+mar[100%] min(9)(:p11.1→q11:) cenM,
subcenM
normal phenotype - infertility {0} provided from Poland
09-
O-
p11.1/
4-3
male/
30y
PBL n.a. 47,XY,+mar[100%] min(9)(:p11.1→q11:)
aCGH - no imbalance
cenM,
subcenM
normal phenotype - infertility {0} provided from  Germany
09-
O-
p11.1/
5-1
male/
prenatal
AF/ PBL/ bucal mucosa
n.a. 47,XY,+mar[100 to 4%]/
46,XY[0 to 96%]
r(9)(::p11.1→q21.33::)
(bp in q: 88.6 Mb
aCGH normal phenotype - due to low level mosaic {140}
09-
O-
p10/
1-1
n.a./
prenatal
AF, PBL
(EKF-
cellbank)
maternal 47,+mar[105]/
46[6]
min(9)(:p10q13:)
FISH-data: RP11-430C15 (66.18 MB) on sSMC
cenM, subcenM, M-FISH AMA. mother normal with mos min(9)(:p10→q13:)/min(9)(:q13→p10::p10→q13:) in PBL: 47,XX,+mar[11]/46,XX[39] - in FISH 47,XX,+mar[9]/46,XX[216] {0} provided from Germany

O-Cases with similar imbalances NOT caused by sSMC (O-IMB)

case no.
gender/
age at diagnosis

studied
material

de novo/
Inherited

GTG-banding and final FISH result test
methods

clinical symptoms
Reference
09-
O-

IMB-
p13.1/
1-1
female/
adult
PBL n.a. 46,XX,dup(9)(p13.1p11.2) cep probes normal pregnant women - also in unborn child and later born normal child {43}
09-
O-

IMB-
p12/
1-1

female/
prenatal
AF maternal 46,XX,dup(9)(p11q12) n.a. detected in prenatal diagnosis, normal child born, mother normal as well {50}
09-
O-

IMB-
p11/
1-1
female/
adult
PBL familial 46,XX,dup(9)(p11q13) cep probes detected in a mentally retarded women, sister with same variant normal {40}
09-
O-

IMB-
p11/
2-1
male/
adult
PBL familial 46,XY,dup(9)(p11q12) CGH detected in a mentally retarded sons, father and grandfather with variant normal {42}
09-
O-

IMB-
p11/
other variants

for similar variants in p1 and q12 see {41; 44}
{41; 44}
-
-
-
-
-
-
-
-

O-cases with unclear/insufficient characterization of the sSMC (CO)

case no.
gender/
age at diagnosis

studied
material

de novo/
inherited

GTG-banding result
grade of mosaicism

final result of the sSMC
test
methods

clinical symptoms
Reference
09-
CO-
1
female/
prenatal
AF/PBL
cell line at ECACC DD1362
maternal 47,XX,+mar[80%]/
46,XX[20%]
(in mother in 70% of PBL)
min(9) all available centromeric probes; UPD-test normal at birth; mother normal at age of 38y {3} case 8
{15} case 1
09-
CO-
2
female/
n.a.
AF maternal
mar in mosaic (grade not specified)
47,XX,+mar[100%] mar(9) FISH with cep probes normal {17}